Individual Defensive Rating is a misleading stat. It's not directly how many points someone scores on a team while that individual is on the court. It's based on the team's overall defensive rating and how many blocks/steals/rebounds the player had. This is why guys like Bowen doesn't have a high DTRG, despite being an amazing defender. He didn't get many box score stats defensively. If you're on a team that's great defensively, you'll almost automatically have a great DTRG.
For example: Ryan Anderson had a 101 DTRG in 2011 (puts him in the top 6% DTRG-wise)...his team was 3rd in the league defensively that year. 2 years later in 2013, he had a DTRG of 112 (bottom 7% DTRG-wise)...his team was 28th in defense that year.
So did Ryan Anderson go from being an elite defender to a horrible one in the span of 2 years? Of course not.
Duncan is an all-time great defender. But using his individual DTRG to justify that is the wrong way of going about things. Instead, just look at the fact that the worst Duncan-anchored defense ever was 11th in 2011. From '99-10, the Spurs always had a top 10 defense in the league, and from '99-'08, the Spurs never dipped below #3 in the league defensively.